Dicots PLAZA 4.5 gene overview : Pp3s222_10

Gene: Pp3s222_10 (Physcomitrium patens)

Overview

Gene Identifier: Pp3s222_10
Transcript Identifier: Pp3s222_10V3.2
Gene Type: Coding gene
Location: scaffold_222 : 1-582 : negative

Family Information

Homologous gene family: HOM04D004146
(84 genes in 54 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
alias	Phpat.1Z069100
name	Pp3s222_10V3.2
pacid	32948179
tid	PAC:32948179

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006364	IEA	InterPro	rRNA processing
GO:0009561	IEA	PLAZA Integrative Orthology	megagametogenesis	AT3G60360

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT3G60360

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0032040	IEA	InterPro	small-subunit processome

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR007144	Small-subunit processome, Utp11

Mapman id	Description
17.1.3.2.1.13	.Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU processome.pre-40S ribosomal subunit nuclear assembly.assembly factor (UTP11)