Dicots PLAZA 4.5 gene overview : Pp3s155_30

Gene: Pp3s155_30 (Physcomitrium patens)

Overview

Gene Identifier: Pp3s155_30
Transcript Identifier: Pp3s155_30V3.1
Gene Type: Coding gene
Location: scaffold_155 : 4932-6428 : positive

Family Information

Homologous gene family: HOM04D000180
(1107 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000215
(656 genes in 55 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
name	Pp3s155_30V3.1
pacid	32980929
tid	PAC:32980929

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008152	IEA	InterPro	metabolic process

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003824	IEA	InterPro	catalytic activity

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR020845	AMP-binding, conserved site
IPR000873	AMP-dependent synthetase/ligase
IPR025110	AMP-binding enzyme, C-terminal domain

Mapman id	Description
5.1.5.3	.Lipid metabolism.fatty acid biosynthesis.mitochondrial fatty acid synthase (mtFAS) system.malonyl-CoA synthetase (mtMCS)