Dicots PLAZA 4.5 gene overview : Pp3s116_10

Gene: Pp3s116_10 (Physcomitrium patens)

Overview

Gene Identifier: Pp3s116_10
Transcript Identifier: Pp3s116_10V3.2
Gene Type: Coding gene
Location: scaffold_116 : 62-301 : negative

Family Information

Homologous gene family: HOM04D000145
(1330 genes in 55 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
name	Pp3s116_10V3.2
pacid	32932606
tid	PAC:32932606

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009765	IEA	PLAZA Homology (enrichment)	photosynthesis, light harvesting	HOM04D000145

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016020	IEA	PLAZA Homology (enrichment)	membrane	HOM04D000145

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

No InterPro domains detected for this gene.

Mapman id	Description
35.2	not assigned.not annotated