Dicots PLAZA 4.5 gene overview : Potri.006G078600

Gene: Potri.006G078600 (Populus trichocarpa)

Overview

Gene Identifier: Potri.006G078600
Transcript Identifier: Potri.006G078600.1
Gene Type: Coding gene
Location: Chr06 : 5951302-5953908 : negative

Family Information

Homologous gene family: HOM04D000036
(2681 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D001290
(215 genes in 49 species)
specific family

Duplication type: Block duplicate

Descriptions

Description: similar to leucine-rich repeat transmembrane protein kinase; putative; [ co-ortholog (3of3) of At2g07040, ]

Identifiers

Type	Value
alias	POPTR_0006s07820
alias	gw1.VI.1415.1
id	Potri.006G078600.v3.1
pacid	37246152
tid	Potri.006G078600.1.v3.1
tid	Potri.006G078600.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006468	IEA	InterPro	protein phosphorylation
GO:0080092	IEA	PLAZA Integrative Orthology	regulation of pollen tube growth	AT2G07040
GO:0009846	IEA	PLAZA Integrative Orthology	pollen germination	AT2G07040
GO:0009860	IEA	PLAZA Integrative Orthology	pollen tube growth	AT2G07040

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding
GO:0004672	IEA	InterPro	protein kinase activity
GO:0005524	IEA	InterPro	ATP binding
GO:0004674	IEA	PLAZA Integrative Orthology	protein serine/threonine kinase activity	AT2G07040

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0090406	IEA	PLAZA Integrative Orthology	pollen tube	AT2G07040
GO:0016324	IEA	PLAZA Integrative Orthology	apical plasma membrane	AT5G35390
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT2G07040
GO:0045177	IEA	PLAZA Integrative Orthology	apical part of cell	AT5G35390

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR032675	Leucine-rich repeat domain, L domain-like
IPR013210	Leucine-rich repeat-containing N-terminal, plant-type
IPR001611	Leucine-rich repeat
IPR000719	Protein kinase domain
IPR011009	Protein kinase-like domain

Mapman id	Description
18.4.1.3	.Protein modification.phosphorylation.TKL protein kinase superfamily.protein kinase (LRR-III)