Dicots PLAZA 4.5 gene overview : Peaxi162Scf00643g00323

Gene: Peaxi162Scf00643g00323 (Petunia axillaris)

Overview

Gene Identifier: Peaxi162Scf00643g00323
Transcript Identifier: Peaxi162Scf00643g00323.1
Gene Type: Coding gene
Location: Peaxi162Scf00643 : 309602-314371 : positive

Family Information

Homologous gene family: HOM04D000254
(847 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D003096
(122 genes in 55 species)
specific family

Descriptions

Description: Spliceosome RNA helicase DDX39B

Identifiers

Type	Value
id	Peaxi162Scf00643g03018
tid	Peaxi162Scf00643g03018.1

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0046686	IEA	PLAZA Integrative Orthology	response to cadmium ion	AT5G11170

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0005524	IEA	InterPro	ATP binding
GO:0004004	IEA	PLAZA Integrative Orthology	ATP-dependent RNA helicase activity	AT5G11200
GO:0003697	IEA	PLAZA Integrative Orthology	single-stranded DNA binding	AT5G11200
GO:0003690	IEA	PLAZA Integrative Orthology	double-stranded DNA binding	AT5G11200
GO:0003725	IEA	PLAZA Integrative Orthology	double-stranded RNA binding	AT5G11200
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT5G11200
GO:0016887	IEA	PLAZA Integrative Orthology	ATPase activity	AT5G11200

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005730	IEA	PLAZA Integrative Orthology	nucleolus	AT5G11170
GO:0005618	IEA	PLAZA Integrative Orthology	cell wall	AT5G11200
GO:0009506	IEA	PLAZA Integrative Orthology	plasmodesma	AT5G11200
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT5G11200

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR001650	Helicase, C-terminal
IPR011545	DEAD/DEAH box helicase domain
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
16.4.7.1.1	.RNA processing.pre-mRNA splicing.spliceosome assembly and disassembly.RNA helicase activities.RNA helicase (Sub2)
16.11.1.3	.RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex.helicase component UAP56