Dicots PLAZA 4.5 gene overview : PGSC0003DMG400030301

Gene: PGSC0003DMG400030301 (Solanum tuberosum)

Overview

Gene Identifier: PGSC0003DMG400030301
Transcript Identifier: PGSC0003DMT400077891
Gene Type: Coding gene
Location: ST4.03ch12 : 5486783-5489662 : negative

Family Information

Homologous gene family: HOM04D000278
(779 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000279
(588 genes in 55 species)
specific family

Duplication type: Tandem duplicate

Descriptions

Description: Cycloartenol synthase

Identifiers

Type	Value
pacid	37449012
tid	PGSC0003DMT400077891.v4.03
pid	PGSC0003DMP400052734

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016866	IEA	PLAZA Homology (enrichment)	intramolecular transferase activity	HOM04D000278

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid

Mapman id	Description
9.1.4.3	.Secondary metabolism.terpenoids.terpene biosynthesis.triterpenoid synthase