Dicots PLAZA 4.5 gene overview : PGSC0003DMG400009698

Gene: PGSC0003DMG400009698 (Solanum tuberosum)

Overview

Gene Identifier: PGSC0003DMG400009698
Transcript Identifier: PGSC0003DMT400025104
Gene Type: Coding gene
Location: ST4.03ch03 : 22937498-22982448 : positive

Family Information

Homologous gene family: HOM04D001391
(213 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D005547
(79 genes in 55 species)
specific family

Descriptions

Description: Ferredoxin-dependent glutamate synthase 1

Identifiers

Type	Value
pacid	37463895
tid	PGSC0003DMT400025104.v4.03
pid	PGSC0003DMP400017124

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...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006537	IEA	InterPro	glutamate biosynthetic process
GO:0055114	IEA	InterPro	oxidation-reduction process
GO:0008152	IEA	InterPro	metabolic process
GO:0006807	IEA	InterPro	nitrogen compound metabolic process
GO:0019676	IEA	PLAZA Integrative Orthology	ammonia assimilation cycle	AT5G53460
GO:0042128	IEA	PLAZA Integrative Orthology	nitrate assimilation	AT5G53460
GO:0009744	IEA	PLAZA Integrative Orthology	response to sucrose	AT5G04140
GO:0009735	IEA	PLAZA Integrative Orthology	response to cytokinin	AT5G53460
GO:0009416	IEA	PLAZA Integrative Orthology	response to light stimulus	AT5G04140
GO:0048589	IEA	PLAZA Integrative Orthology	developmental growth	AT5G53460
GO:0046686	IEA	PLAZA Integrative Orthology	response to cadmium ion	AT5G53460
GO:0080114	IEA	PLAZA Integrative Orthology	positive regulation of glycine hydroxymethyltransferase activity	AT5G04140
GO:0009853	IEA	PLAZA Integrative Orthology	photorespiration	AT5G04140

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0015930	IEA	InterPro	glutamate synthase activity
GO:0016638	IEA	InterPro	oxidoreductase activity, acting on the CH-NH2 group of donors
GO:0016491	IEA	InterPro	oxidoreductase activity
GO:0003824	IEA	InterPro	catalytic activity
GO:0016041	IEA	PLAZA Integrative Orthology	glutamate synthase (ferredoxin) activity	AT5G04140
GO:0016040	IEA	PLAZA Integrative Orthology	glutamate synthase (NADH) activity	AT5G53460
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT5G04140

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005739	IEA	PLAZA Integrative Orthology	mitochondrion	AT5G04140
GO:0016020	IEA	PLAZA Integrative Orthology	membrane	AT5G04140
GO:0048046	IEA	PLAZA Integrative Orthology	apoplast	AT5G04140
GO:0009507	IEA	PLAZA Integrative Orthology	chloroplast	AT5G04140
GO:0009536	IEA	PLAZA Integrative Orthology	plastid	AT5G53460
GO:0005773	IEA	PLAZA Integrative Orthology	vacuole	AT5G04140
GO:0005783	IEA	PLAZA Integrative Orthology	endoplasmic reticulum	AT5G04140
GO:0005794	IEA	PLAZA Integrative Orthology	Golgi apparatus	AT5G04140
GO:0009941	IEA	PLAZA Integrative Orthology	chloroplast envelope	AT5G04140
GO:0009570	IEA	PLAZA Integrative Orthology	chloroplast stroma	AT5G04140

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR002932	Glutamate synthase domain
IPR002489	Glutamate synthase, alpha subunit, C-terminal
IPR013785	Aldolase-type TIM barrel
IPR029055	Nucleophile aminohydrolases, N-terminal
IPR017932	Glutamine amidotransferase type 2 domain
IPR006982	Glutamate synthase, central-N

Mapman id	Description
25.1.5.2.1	.Nutrient uptake.nitrogen assimilation.ammonium assimilation.glutamate synthase activities.Fd-dependent glutamate synthase