Dicots PLAZA 4.5 gene overview : PGSC0003DMG400000305

Gene: PGSC0003DMG400000305 (Solanum tuberosum)

Overview

Gene Identifier: PGSC0003DMG400000305
Transcript Identifier: PGSC0003DMT400000820
Gene Type: Coding gene
Location: ST4.03ch12 : 4396476-4399303 : positive

Family Information

Homologous gene family: HOM04D000083
(1914 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D006593
(72 genes in 54 species)
specific family

Descriptions

Description: Cak1

Identifiers

Type	Value
pacid	37448388
tid	PGSC0003DMT400000820.v4.03
pid	PGSC0003DMP400000609

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006468	IEA	InterPro	protein phosphorylation
GO:0000079	IEA	PLAZA Integrative Orthology	regulation of cyclin-dependent protein serine/threonine kinase activity	AT4G28980
GO:0010078	IEA	PLAZA Integrative Orthology	maintenance of root meristem identity	AT4G28980

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004672	IEA	InterPro	protein kinase activity
GO:0005524	IEA	InterPro	ATP binding
GO:0004674	IEA	PLAZA Integrative Orthology	protein serine/threonine kinase activity	AT4G28980
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT4G28980
GO:0019912	IEA	PLAZA Integrative Orthology	cyclin-dependent protein kinase activating kinase activity	AT4G28980

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT4G28980
GO:0005737	IEA	PLAZA Integrative Orthology	cytoplasm	AT4G28980
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT4G28980

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR000719	Protein kinase domain
IPR017441	Protein kinase, ATP binding site
IPR008271	Serine/threonine-protein kinase, active site
IPR011009	Protein kinase-like domain

Mapman id	Description
13.1.1.2.6	.Cell cycle organisation.cell cycle control.cyclin-dependent regulation.cyclin-dependent protein kinase complex.catalytic component CDKF
18.4.3.1.6	.Protein modification.phosphorylation.CMGC protein kinase superfamily.CDK protein kinase families.protein kinase (CDKF/CDK20)