Dicots PLAZA 4.5 gene overview : Manes.S049000

Gene: Manes.S049000 (Manihot esculenta)

Overview

Gene Identifier: Manes.S049000
Transcript Identifier: Manes.S049000.1
Gene Type: Coding gene
Location: Scaffold00991 : 26467-29516 : negative

Family Information

Homologous gene family: HOM04D000254
(847 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D004343
(92 genes in 55 species)
specific family

Duplication type: Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	Manes.S049000.v6.1
tid	Manes.S049000.1.v6.1
pid	Manes.S049000.1.p
pacid	32339689
old_id	cassava4.1_009441m.g
old_tid	cassava4.1_009441m

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016973	IEA	PLAZA Integrative Orthology	poly(A)+ mRNA export from nucleus	AT3G53110
GO:0009737	IEA	PLAZA Integrative Orthology	response to abscisic acid	AT3G53110
GO:0009408	IEA	PLAZA Integrative Orthology	response to heat	AT3G53110
GO:0009409	IEA	PLAZA Integrative Orthology	response to cold	AT3G53110

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0005524	IEA	InterPro	ATP binding
GO:0008186	IEA	PLAZA Integrative Orthology	RNA-dependent ATPase activity	AT3G53110

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT3G53110
GO:0005737	IEA	PLAZA Integrative Orthology	cytoplasm	AT3G53110
GO:0005635	IEA	PLAZA Integrative Orthology	nuclear envelope	AT3G53110

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR011545	DEAD/DEAH box helicase domain
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
16.11.3.1	.RNA processing.messenger ribonucleoparticle (mRNP) export.mRNP remodeling.ATP-dependent helicase (DBP5/LOS4)