Dicots PLAZA 4.5 gene overview : MDO.mRNA.g.2574.2

Gene: MDO.mRNA.g.2574.2 (Malus domestica)

Overview

Gene Identifier: MDO.mRNA.g.2574.2
Transcript Identifier: MDO.mRNA.t.2574.2
Gene Type: Coding gene
Location: Backbone_2574 : 29588-34063 : positive

Family Information

Homologous gene family: HOM04D000083
(1914 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D002922
(127 genes in 55 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	evm.model.Backbone_2574.2.g
tid	evm.model.Backbone_2574.2

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006468	IEA	InterPro	protein phosphorylation
GO:0009615	IEA	PLAZA Integrative Orthology	response to virus	AT5G10270
GO:0006397	IEA	PLAZA Integrative Orthology	mRNA processing	AT5G64960
GO:0048366	IEA	PLAZA Integrative Orthology	leaf development	AT5G10270
GO:0050792	IEA	PLAZA Integrative Orthology	regulation of viral process	AT5G64960
GO:0009908	IEA	PLAZA Integrative Orthology	flower development	AT5G64960
GO:0048440	IEA	PLAZA Integrative Orthology	carpel development	AT5G64960

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004672	IEA	InterPro	protein kinase activity
GO:0005524	IEA	InterPro	ATP binding
GO:0016301	IEA	PLAZA Integrative Orthology	kinase activity	AT5G10270
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT5G10270

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT5G10270
GO:0016604	IEA	PLAZA Integrative Orthology	nuclear body	AT5G64960
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT5G64960

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR000719	Protein kinase domain
IPR017441	Protein kinase, ATP binding site
IPR008271	Serine/threonine-protein kinase, active site
IPR011009	Protein kinase-like domain

Mapman id	Description
13.1.1.2.3	.Cell cycle organisation.cell cycle control.cyclin-dependent regulation.cyclin-dependent protein kinase complex.catalytic component CDKC
15.3.2.1.1	.RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II phosphorylation/dephosphorylation.CTDK-I protein kinase complex.catalytic component CDKC-1/CTK1
18.4.3.1.3	.Protein modification.phosphorylation.CMGC protein kinase superfamily.CDK protein kinase families.protein kinase (CDKC)