Dicots PLAZA 4.5 gene overview : MDO.mRNA.g.1826.8

Gene: MDO.mRNA.g.1826.8 (Malus domestica)

Overview

Gene Identifier: MDO.mRNA.g.1826.8
Transcript Identifier: MDO.mRNA.t.1826.8
Gene Type: Coding gene
Location: Backbone_1826 : 47160-49604 : positive

Family Information

Homologous gene family: HOM04D000952
(294 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D006755
(71 genes in 54 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	evm.model.Backbone_1826.8.g
tid	evm.model.Backbone_1826.8

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006614	IEA	InterPro	SRP-dependent cotranslational protein targeting to membrane
GO:0070208	IEA	PLAZA Integrative Orthology	protein heterotrimerization	AT5G03940
GO:0045038	IEA	PLAZA Integrative Orthology	protein import into chloroplast thylakoid membrane	AT5G03940

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008312	IEA	InterPro	7S RNA binding
GO:0005525	IEA	InterPro	GTP binding
GO:0005048	IEA	PLAZA Integrative Orthology	signal sequence binding	AT5G03940
GO:0003924	IEA	PLAZA Homology (enrichment)	GTPase activity	HOM04D000952
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT5G03940
GO:0019904	IEA	PLAZA Integrative Orthology	protein domain specific binding	AT5G03940

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0048500	IEA	InterPro	signal recognition particle
GO:0043234	IEA	PLAZA Integrative Orthology	protein complex	AT5G03940
GO:0080085	IEA	PLAZA Integrative Orthology	signal recognition particle, chloroplast targeting	AT5G03940
GO:0009507	IEA	PLAZA Integrative Orthology	chloroplast	AT5G03940
GO:0009570	IEA	PLAZA Integrative Orthology	chloroplast stroma	AT5G03940

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR004125	Signal recognition particle, SRP54 subunit, M-domain
IPR000897	Signal recognition particle, SRP54 subunit, GTPase domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
35.1	not assigned.annotated