Dicots PLAZA 4.5 gene overview : LOC_Os08g41790

Gene: LOC_Os08g41790 (Oryza sativa ssp. japonica)

Overview

Gene Identifier: LOC_Os08g41790
Transcript Identifier: LOC_Os08g41790.1
Gene Type: Coding gene
Location: Chr8 : 26389835-26394829 : positive

Family Information

Homologous gene family: HOM04D001240
(238 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D001235
(219 genes in 55 species)
specific family

Duplication type: Block duplicate

Descriptions

Description: phosphoribulokinase/Uridine kinase family protein, expressed

Identifiers

Type	Value
id	LOC_Os08g41790.MSUv7.0
pacid	33105415
tid	LOC_Os08g41790.1.MSUv7.0
tid	LOC_Os08g41790.1
RAP	Os08g0530000

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...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009116	IEA	InterPro	nucleoside metabolic process
GO:0044206	IEA	InterPro	UMP salvage
GO:0008152	IEA	InterPro	metabolic process
GO:2001006	IEA	PLAZA Integrative Orthology	regulation of cellulose biosynthetic process	AT3G27190
GO:0006207	IEA	PLAZA Integrative Orthology	'de novo' pyrimidine nucleobase biosynthetic process	AT3G27190
GO:1901141	IEA	PLAZA Integrative Orthology	regulation of lignin biosynthetic process	AT3G27190
GO:2000904	IEA	PLAZA Integrative Orthology	regulation of starch metabolic process	AT5G40870

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004849	IEA	InterPro	uridine kinase activity
GO:0005524	IEA	InterPro	ATP binding
GO:0016301	IEA	InterPro	kinase activity
GO:0004845	IEA	PLAZA Integrative Orthology	uracil phosphoribosyltransferase activity	AT5G40870

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009536	RCA	Gene Ontology	plastid
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT5G40870
GO:0005737	IEA	PLAZA Integrative Orthology	cytoplasm	AT5G40870
GO:0009507	IEA	PLAZA Integrative Orthology	chloroplast	AT5G40870

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR000836	Phosphoribosyltransferase domain
IPR029930	Uridine kinase-like protein, plant
IPR006083	Phosphoribulokinase/uridine kinase
IPR000764	Uridine kinase-like
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR029057	Phosphoribosyltransferase-like

Mapman id	Description
6.2.2.1	.Nucleotide metabolism.pyrimidines.salvage pathway.uridine/cytidine kinase (UCK)