Dicots PLAZA 4.5 gene overview : LOC_Os01g48960

Gene: LOC_Os01g48960 (Oryza sativa ssp. japonica)

Overview

Gene Identifier: LOC_Os01g48960
Transcript Identifier: LOC_Os01g48960.1
Gene Type: Coding gene
Location: Chr1 : 28091488-28102049 : negative

Family Information

Homologous gene family: HOM04D001391
(213 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D004381
(92 genes in 54 species)
specific family

Duplication type: Block duplicate

Descriptions

Description: glutamate synthase, chloroplast precursor, putative, expressed

Identifiers

Type	Value
id	LOC_Os01g48960.MSUv7.0
pacid	33122250
tid	LOC_Os01g48960.1.MSUv7.0
tid	LOC_Os01g48960.1
UniProtKB	Q0JKD0
UniProtKB	Q9ZNX7
RAP	Os01g0682001

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0022900	RCA	Gene Ontology	electron transport chain
GO:0006537	IMP	UniProt	glutamate biosynthetic process
GO:0006537	RCA	Gene Ontology	glutamate biosynthetic process
GO:0006537	IEA	InterPro	glutamate biosynthetic process
GO:0019676	IMP	UniProt	ammonia assimilation cycle
GO:0048589	IMP	UniProt	developmental growth
GO:0097054	IEA	UniProt	L-glutamate biosynthetic process
GO:0060359	IEP	UniProt	response to ammonium ion
GO:0055114	IEA	InterPro	oxidation-reduction process
GO:0008152	IEA	InterPro	metabolic process
GO:0006807	IEA	InterPro	nitrogen compound metabolic process
GO:0009735	IEA	PLAZA Integrative Orthology	response to cytokinin	AT5G53460
GO:0042128	IEA	PLAZA Integrative Orthology	nitrate assimilation	AT5G53460
GO:0046686	IEA	PLAZA Integrative Orthology	response to cadmium ion	AT5G53460

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0015036	RCA	Gene Ontology	disulfide oxidoreductase activity
GO:0016040	IEA	UniProt	glutamate synthase (NADH) activity
GO:0016040	RCA	Gene Ontology	glutamate synthase (NADH) activity
GO:0016040	IEA	InterPro	glutamate synthase (NADH) activity
GO:0051538	IEA	UniProt	3 iron, 4 sulfur cluster binding
GO:0050660	IEA	UniProt	flavin adenine dinucleotide binding
GO:0050660	IEA	InterPro	flavin adenine dinucleotide binding
GO:0010181	IEA	UniProt	FMN binding
GO:0010181	IEA	InterPro	FMN binding
GO:0015930	IBA	UniProt	glutamate synthase activity
GO:0015930	IEA	InterPro	glutamate synthase activity
GO:0005506	IEA	UniProt	iron ion binding
GO:0005506	IEA	InterPro	iron ion binding
GO:0016638	IEA	InterPro	oxidoreductase activity, acting on the CH-NH2 group of donors
GO:0016491	IEA	InterPro	oxidoreductase activity
GO:0003824	IEA	InterPro	catalytic activity
GO:0045181	IEA	InterPro	glutamate synthase activity, NAD(P)H as acceptor
GO:0051536	IEA	InterPro	iron-sulfur cluster binding
GO:0016639	IEA	InterPro	oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009507	IEA	UniProt	chloroplast
GO:0005737	IBA	UniProt	cytoplasm
GO:0009536	IDA	UniProt	plastid
GO:0009570	IEA	PLAZA Integrative Orthology	chloroplast stroma	AT5G53460

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR002932	Glutamate synthase domain
IPR002489	Glutamate synthase, alpha subunit, C-terminal
IPR023753	FAD/NAD(P)-binding domain
IPR013785	Aldolase-type TIM barrel
IPR029055	Nucleophile aminohydrolases, N-terminal
IPR028261	Dihydroprymidine dehydrogenase domain II
IPR017932	Glutamine amidotransferase type 2 domain
IPR006982	Glutamate synthase, central-N
IPR012220	Glutamate synthase, eukaryotic
IPR009051	Alpha-helical ferredoxin
IPR006005	Glutamate synthase, NADH/NADPH, small subunit 1

Mapman id	Description
25.1.5.2.2	.Nutrient uptake.nitrogen assimilation.ammonium assimilation.glutamate synthase activities.NADH-dependent glutamate synthase