Dicots PLAZA 4.5 gene overview : Glyma.U040700

Gene: Glyma.U040700 (Glycine max)

Overview

Gene Identifier: Glyma.U040700
Transcript Identifier: Glyma.U040700.1
Gene Type: Coding gene
Location: scaffold_623 : 945-1466 : positive

Family Information

Homologous gene family: HOM04D000181
(1097 genes in 52 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	Glyma.U040700.1.Wm82.a2.v1
id	Glyma.U040700.Wm82.a2.v1
pacid	30487122
pid	Glyma.U040700.1.p
alias	Glyma10g10690
old_tid	Glyma10g10690.2

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003677	IEA	InterPro	DNA binding
GO:0046983	IEA	InterPro	protein dimerization activity

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR002100	Transcription factor, MADS-box

Mapman id	Description
15.5.14	.RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL)