Dicots PLAZA 4.5 gene overview : Glyma.U007000

Gene: Glyma.U007000 (Glycine max)

Overview

Gene Identifier: Glyma.U007000
Transcript Identifier: Glyma.U007000.1
Gene Type: Coding gene
Location: scaffold_1742 : 111-1556 : negative

Family Information

Homologous gene family: HOM04D001920
(164 genes in 54 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	Glyma.U007000.1.Wm82.a2.v1
id	Glyma.U007000.Wm82.a2.v1
pacid	30523541
pid	Glyma.U007000.1.p
old_id	Glyma1784s00200
old_tid	Glyma1784s00200.2

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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...a custom phylogenetic tree using this gene as seed.

View

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0050832	IEA	PLAZA Integrative Orthology	defense response to fungus	AT1G75380
GO:0031063	IEA	PLAZA Integrative Orthology	regulation of histone deacetylation	AT1G75380
GO:0045892	IEA	PLAZA Integrative Orthology	negative regulation of transcription, DNA-templated	AT1G75380

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004518	IEA	InterPro	nuclease activity
GO:0043565	IEA	PLAZA Integrative Orthology	sequence-specific DNA binding	AT1G75380

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR003729	Bifunctional nuclease domain

Mapman id	Description
35.1	not assigned.annotated