Dicots PLAZA 4.5 gene overview : Glyma.U006000

Gene: Glyma.U006000 (Glycine max)

Overview

Gene Identifier: Glyma.U006000
Transcript Identifier: Glyma.U006000.1
Gene Type: Coding gene
Location: scaffold_164 : 153-2257 : negative

Family Information

Homologous gene family: HOM04D000046
(2459 genes in 53 species)
specific family
Orthologous gene family: ORTHO04D000636
(340 genes in 40 species)
specific family

Duplication type: Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	Glyma.U006000.1.Wm82.a2.v1
id	Glyma.U006000.Wm82.a2.v1
pacid	30511183
pid	Glyma.U006000.1.p

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR032675	Leucine-rich repeat domain, L domain-like
IPR001611	Leucine-rich repeat

Mapman id	Description
35.1	not assigned.annotated