Dicots PLAZA 4.5 gene overview : Glyma.U003700

Gene: Glyma.U003700 (Glycine max)

Overview

Gene Identifier: Glyma.U003700
Transcript Identifier: Glyma.U003700.1
Gene Type: Coding gene
Location: scaffold_1271 : 236-1327 : negative

Family Information

Homologous gene family: HOM04D000013
(4504 genes in 49 species)
specific family
Orthologous gene family: ORTHO04D001180
(227 genes in 13 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	Glyma.U003700.1.Wm82.a2.v1
id	Glyma.U003700.Wm82.a2.v1
pacid	30527674
pid	Glyma.U003700.1.p

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR015915	Kelch-type beta propeller
IPR001810	F-box domain
IPR011043	Galactose oxidase/kelch, beta-propeller
IPR017451	F-box associated interaction domain

Mapman id	Description
19.2.2.8.1.4.6	.Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ligase complexes.F-BOX substrate adaptor components.component FBX