Dicots PLAZA 4.5 gene overview : Glyma.17G201800

Gene: Glyma.17G201800 (Glycine max)

Overview

Gene Identifier: Glyma.17G201800
Transcript Identifier: Glyma.17G201800.1
Gene Type: Coding gene
Location: Chr17 : 32090425-32093099 : positive

Family Information

Homologous gene family: HOM04D000061
(2190 genes in 49 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	Glyma.17G201800.1.Wm82.a2.v1
id	Glyma.17G201800.Wm82.a2.v1
pacid	30479284
pid	Glyma.17G201800.1.p
old_id	Glyma17g29681

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006355	IEA	InterPro	regulation of transcription, DNA-templated

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008270	IEA	InterPro	zinc ion binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR031052	FHY3/FAR1 family
IPR018289	MULE transposase domain
IPR004330	FAR1 DNA binding domain
IPR007527	Zinc finger, SWIM-type
IPR006564	Zinc finger, PMZ-type

Mapman id	Description
15.5.46	.RNA biosynthesis.transcriptional regulation.transcription factor (FAR1)