Dicots PLAZA 4.5 gene overview : Glyma.01G017400

Gene: Glyma.01G017400 (Glycine max)

Overview

Gene Identifier: Glyma.01G017400
Transcript Identifier: Glyma.01G017400.1
Gene Type: Coding gene
Location: Chr01 : 1654010-1657107 : negative

Family Information

Homologous gene family: HOM04D000108
(1536 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D003491
(110 genes in 49 species)
specific family

Duplication type: Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	Glyma.01G017400.1.Wm82.a2.v1
id	Glyma.01G017400.Wm82.a2.v1
pacid	30542460
pid	Glyma.01G017400.1.p
old_id	Glyma01g02150
old_tid	Glyma01g02150.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0003729	IEA	PLAZA Integrative Orthology	mRNA binding	AT2G35410

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009579	IEA	PLAZA Integrative Orthology	thylakoid	AT2G35410
GO:0009507	IEA	PLAZA Integrative Orthology	chloroplast	AT2G35410
GO:0009570	IEA	PLAZA Integrative Orthology	chloroplast stroma	AT2G35410

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR000504	RNA recognition motif domain

Mapman id	Description
35.1	not assigned.annotated