Dicots PLAZA 4.5 gene overview : Glyma.01G017300

Gene: Glyma.01G017300 (Glycine max)

Overview

Gene Identifier: Glyma.01G017300
Transcript Identifier: Glyma.01G017300.1
Gene Type: Coding gene
Location: Chr01 : 1648660-1649754 : negative

Family Information

Homologous gene family: HOM04D000017
(3733 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000627
(347 genes in 52 species)
specific family

Duplication type: Tandem duplicate and Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	Glyma.01G017300.1.Wm82.a2.v1
id	Glyma.01G017300.Wm82.a2.v1
pacid	30542465
pid	Glyma.01G017300.1.p
old_id	Glyma01g02140
old_tid	Glyma01g02140.2

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0080167	IEA	PLAZA Integrative Orthology	response to karrikin	AT3G03550

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type

Mapman id	Description
19.2.2.1.5.3.3	.Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-class E3 ligase