Dicots PLAZA 4.5 gene overview : Glyma.01G016600

Gene: Glyma.01G016600 (Glycine max)

Overview

Gene Identifier: Glyma.01G016600
Transcript Identifier: Glyma.01G016600.1
Gene Type: Coding gene
Location: Chr01 : 1592998-1595208 : positive

Family Information

Homologous gene family: HOM04D000007
(6312 genes in 53 species)
specific family
Orthologous gene family: ORTHO04D000003
(3714 genes in 53 species)
specific family

Duplication type: Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	Glyma.01G016600.1.Wm82.a2.v1
id	Glyma.01G016600.Wm82.a2.v1
pacid	30543092
pid	Glyma.01G016600.1.p
old_id	Glyma01g02070
old_tid	Glyma01g02070.2

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009759	IEA	PLAZA Integrative Orthology	indole glucosinolate biosynthetic process	AT1G18570
GO:0009737	IEA	PLAZA Integrative Orthology	response to abscisic acid	AT1G18570
GO:0009617	IEA	PLAZA Integrative Orthology	response to bacterium	AT1G18570
GO:0009739	IEA	PLAZA Integrative Orthology	response to gibberellin	AT1G18570
GO:0052544	IEA	PLAZA Integrative Orthology	defense response by callose deposition in cell wall	AT1G18570
GO:0009733	IEA	PLAZA Integrative Orthology	response to auxin	AT1G18570
GO:0009723	IEA	PLAZA Integrative Orthology	response to ethylene	AT1G18570
GO:0009625	IEA	PLAZA Integrative Orthology	response to insect	AT1G18570
GO:0042742	IEA	PLAZA Integrative Orthology	defense response to bacterium	AT1G18570
GO:0009751	IEA	PLAZA Integrative Orthology	response to salicylic acid	AT1G18570
GO:0009753	IEA	PLAZA Integrative Orthology	response to jasmonic acid	AT1G18570
GO:0009682	IEA	PLAZA Integrative Orthology	induced systemic resistance	AT1G18570
GO:0009651	IEA	PLAZA Integrative Orthology	response to salt stress	AT1G18570

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003677	IEA	InterPro	DNA binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)