Dicots PLAZA 4.5 gene overview : Glyma.01G016000

Gene: Glyma.01G016000 (Glycine max)

Overview

Gene Identifier: Glyma.01G016000
Transcript Identifier: Glyma.01G016000.1
Gene Type: Coding gene
Location: Chr01 : 1547216-1547437 : negative

Family Information

Homologous gene family: HOM04D042930
(orphan gene)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	Glyma.01G016000.1.Wm82.a2.v1
id	Glyma.01G016000.Wm82.a2.v1
pacid	30543714
pid	Glyma.01G016000.1.p
old_id	Glyma01g02020
old_tid	Glyma01g02020.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

No GO associations found for this gene.

No InterPro domains detected for this gene.

Mapman id	Description
35.2	not assigned.not annotated