Dicots PLAZA 4.5 gene overview : Glyma.01G015500

Gene: Glyma.01G015500 (Glycine max)

Overview

Gene Identifier: Glyma.01G015500
Transcript Identifier: Glyma.01G015500.1
Gene Type: Coding gene
Location: Chr01 : 1516654-1519720 : negative

Family Information

Homologous gene family: HOM04D000724
(379 genes in 52 species)
specific family
Orthologous gene family: ORTHO04D000945
(261 genes in 52 species)
specific family

Duplication type: Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	Glyma.01G015500.1.Wm82.a2.v1
id	Glyma.01G015500.Wm82.a2.v1
pacid	30544106
pid	Glyma.01G015500.1.p
old_id	Glyma01g01950
old_tid	Glyma01g01950.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009735	IEA	PLAZA Tree-based Orthology	response to cytokinin	AT4G17720

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0005515	IEA	PLAZA Tree-based Orthology	protein binding	AT5G16840

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005829	IEA	PLAZA Tree-based Orthology	cytosol	AT4G17720

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR000504	RNA recognition motif domain

Mapman id	Description
35.1	not assigned.annotated