Dicots PLAZA 4.5 gene overview : Glyma.01G014000

Gene: Glyma.01G014000 (Glycine max)

Overview

Gene Identifier: Glyma.01G014000
Transcript Identifier: Glyma.01G014000.1
Gene Type: Coding gene
Location: Chr01 : 1337890-1341947 : negative

Family Information

Homologous gene family: HOM04D000072
(2053 genes in 53 species)
specific family
Orthologous gene family: ORTHO04D000630
(343 genes in 53 species)
specific family

Duplication type: Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	Glyma.01G014000.1.Wm82.a2.v1
id	Glyma.01G014000.Wm82.a2.v1
pacid	30542063
pid	Glyma.01G014000.1.p
old_id	Glyma01g01780
old_tid	Glyma01g01780.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0030244	IEA	InterPro	cellulose biosynthetic process

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016760	IEA	InterPro	cellulose synthase (UDP-forming) activity

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016020	IEA	InterPro	membrane

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR029044	Nucleotide-diphospho-sugar transferases
IPR005150	Cellulose synthase

Mapman id	Description
21.2.3.1.1.2	.Cell wall organisation.hemicellulose.heteromannan.biosynthesis.mannan synthase activities.mannan synthase (CSLD)