Dicots PLAZA 4.5 gene overview : Glyma.01G013800

Gene: Glyma.01G013800 (Glycine max)

Overview

Gene Identifier: Glyma.01G013800
Transcript Identifier: Glyma.01G013800.1
Gene Type: Coding gene
Location: Chr01 : 1314303-1315988 : positive

Family Information

Homologous gene family: HOM04D000116
(1465 genes in 54 species)
specific family
Orthologous gene family: ORTHO04D000430
(441 genes in 53 species)
specific family

Duplication type: Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	Glyma.01G013800.1.Wm82.a2.v1
id	Glyma.01G013800.Wm82.a2.v1
pacid	30541760
pid	Glyma.01G013800.1.p
old_id	Glyma01g01750
old_tid	Glyma01g01750.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

No GO associations found for this gene.

InterPro	Description
IPR001623	DnaJ domain
IPR024593	Domain of unknown function DUF3444

Mapman id	Description
35.2	not assigned.not annotated