Dicots PLAZA 4.5 gene overview : Glyma.01G013400

Gene: Glyma.01G013400 (Glycine max)

Overview

Gene Identifier: Glyma.01G013400
Transcript Identifier: Glyma.01G013400.1
Gene Type: Coding gene
Location: Chr01 : 1278300-1280130 : negative

Family Information

Homologous gene family: HOM04D000024
(3280 genes in 52 species)
specific family
Orthologous gene family: ORTHO04D000044
(1364 genes in 51 species)
specific family

Duplication type: Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	Glyma.01G013400.1.Wm82.a2.v1
id	Glyma.01G013400.Wm82.a2.v1
pacid	30542456
pid	Glyma.01G013400.1.p
old_id	Glyma01g01715
old_tid	Glyma01g01715.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006468	IEA	InterPro	protein phosphorylation

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004672	IEA	InterPro	protein kinase activity
GO:0005524	IEA	InterPro	ATP binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR000719	Protein kinase domain
IPR017441	Protein kinase, ATP binding site
IPR011009	Protein kinase-like domain

Mapman id	Description
50.2.7	.Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group