Dicots PLAZA 4.5 gene overview : Glyma.01G013300

Gene: Glyma.01G013300 (Glycine max)

Overview

Gene Identifier: Glyma.01G013300
Transcript Identifier: Glyma.01G013300.1
Gene Type: Coding gene
Location: Chr01 : 1268275-1274673 : positive

Family Information

Homologous gene family: HOM04D000123
(1416 genes in 47 species)
specific family
Orthologous gene family: ORTHO04D000049
(1341 genes in 47 species)
specific family

Duplication type: Tandem duplicate and Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	Glyma.01G013300.1.Wm82.a2.v1
id	Glyma.01G013300.Wm82.a2.v1
pacid	30542050
pid	Glyma.01G013300.1.p
old_id	Glyma01g01700
old_tid	Glyma01g01700.2

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR020683	Ankyrin repeat-containing domain
IPR025314	Domain of unknown function DUF4219
IPR026961	PGG domain
IPR002110	Ankyrin repeat

Mapman id	Description
35.2	not assigned.not annotated