Dicots PLAZA 4.5 gene overview : Glyma.01G012900

Gene: Glyma.01G012900 (Glycine max)

Overview

Gene Identifier: Glyma.01G012900
Transcript Identifier: Glyma.01G012900.1
Gene Type: Coding gene
Location: Chr01 : 1228018-1230052 : negative

Family Information

Homologous gene family: HOM04D000025
(3156 genes in 39 species)
specific family
Orthologous gene family: ORTHO04D000010
(2611 genes in 39 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	Glyma.01G012900.1.Wm82.a2.v1
id	Glyma.01G012900.Wm82.a2.v1
pacid	30542213
pid	Glyma.01G012900.1.p
old_id	Glyma01g01641

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0000723	IEA	InterPro	telomere maintenance
GO:0006281	IEA	InterPro	DNA repair

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004386	IEA	InterPro	helicase activity
GO:0005524	IEA	InterPro	ATP binding
GO:0003678	IEA	InterPro	DNA helicase activity

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR003840	DNA helicase
IPR010285	DNA helicase Pif1-like
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
35.2	not assigned.not annotated