Dicots PLAZA 4.5 gene overview : Glyma.01G010400

Gene: Glyma.01G010400 (Glycine max)

Overview

Gene Identifier: Glyma.01G010400
Transcript Identifier: Glyma.01G010400.1
Gene Type: Coding gene
Location: Chr01 : 1009280-1013442 : positive

Family Information

Homologous gene family: HOM04D000030
(2867 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D008073
(63 genes in 55 species)
specific family

Duplication type: Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	Glyma.01G010400.1.Wm82.a2.v1
id	Glyma.01G010400.Wm82.a2.v1
pacid	30542227
pid	Glyma.01G010400.1.p
old_id	Glyma01g01390
old_tid	Glyma01g01390.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0005524	IEA	InterPro	ATP binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT1G31970

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR001650	Helicase, C-terminal
IPR011545	DEAD/DEAH box helicase domain
IPR000629	ATP-dependent RNA helicase DEAD-box, conserved site
IPR014014	RNA helicase, DEAD-box type, Q motif
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
35.1	not assigned.annotated