Dicots PLAZA 4.5 gene overview : Glyma.01G009600

Gene: Glyma.01G009600 (Glycine max)

Overview

Gene Identifier: Glyma.01G009600
Transcript Identifier: Glyma.01G009600.1
Gene Type: Coding gene
Location: Chr01 : 937727-940234 : negative

Family Information

Homologous gene family: HOM04D000093
(1791 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000028
(1690 genes in 55 species)
specific family

Duplication type: Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	Glyma.01G009600.1.Wm82.a2.v1
id	Glyma.01G009600.Wm82.a2.v1
pacid	30544817
pid	Glyma.01G009600.1.p
old_id	Glyma01g01300
old_tid	Glyma01g01300.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006355	IEA	PLAZA Integrative Orthology	regulation of transcription, DNA-templated	AT5G45580

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003677	IEA	InterPro	DNA binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like
IPR006447	Myb domain, plants

Mapman id	Description
15.5.2.3	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (GARP)