Dicots PLAZA 4.5 gene overview : Glyma.01G009100

Gene: Glyma.01G009100 (Glycine max)

Overview

Gene Identifier: Glyma.01G009100
Transcript Identifier: Glyma.01G009100.1
Gene Type: Coding gene
Location: Chr01 : 897628-900082 : positive

Family Information

Homologous gene family: HOM04D000184
(1069 genes in 34 species)
specific family
Orthologous gene family: ORTHO04D000089
(1035 genes in 33 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	Glyma.01G009100.1.Wm82.a2.v1
id	Glyma.01G009100.Wm82.a2.v1
pacid	30542475
pid	Glyma.01G009100.1.p
old_id	Glyma01g01251
old_tid	Glyma01g01251.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0046983	IEA	InterPro	protein dimerization activity
GO:0003676	IEA	InterPro	nucleic acid binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR008906	HAT, C-terminal dimerisation domain
IPR025398	Domain of unknown function DUF4371
IPR006580	Zinc finger, TTF-type
IPR012337	Ribonuclease H-like domain

Mapman id	Description
35.2	not assigned.not annotated