Dicots PLAZA 4.5 gene overview : Glyma.01G007800

Gene: Glyma.01G007800 (Glycine max)

Overview

Gene Identifier: Glyma.01G007800
Transcript Identifier: Glyma.01G007800.1
Gene Type: Coding gene
Location: Chr01 : 763427-771737 : positive

Family Information

Homologous gene family: HOM04D001291
(227 genes in 54 species)
specific family
Orthologous gene family: ORTHO04D001531
(191 genes in 54 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	Glyma.01G007800.1.Wm82.a2.v1
id	Glyma.01G007800.Wm82.a2.v1
pacid	30542254
pid	Glyma.01G007800.1.p
old_id	Glyma01g01120
old_tid	Glyma01g01120.2

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0010069	IEA	PLAZA Integrative Orthology	zygote asymmetric cytokinesis in embryo sac	AT1G69770
GO:0051567	IEA	PLAZA Integrative Orthology	histone H3-K9 methylation	AT1G69770
GO:0010425	IEA	PLAZA Integrative Orthology	DNA methylation on cytosine within a CNG sequence	AT1G69770
GO:0006342	IEA	PLAZA Integrative Orthology	chromatin silencing	AT1G69770
GO:0034605	IEA	PLAZA Integrative Orthology	cellular response to heat	AT4G19020
GO:0010426	IEA	PLAZA Integrative Orthology	DNA methylation on cytosine within a CHH sequence	AT4G19020
GO:0006306	IEA	PLAZA Integrative Orthology	DNA methylation	AT1G69770
GO:0045814	IEA	PLAZA Integrative Orthology	negative regulation of gene expression, epigenetic	AT1G69770

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003682	IEA	InterPro	chromatin binding
GO:0008168	IEA	InterPro	methyltransferase activity
GO:0003886	IEA	PLAZA Integrative Orthology	DNA (cytosine-5-)-methyltransferase activity	AT1G69770

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR001025	Bromo adjacent homology (BAH) domain
IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
IPR023780	Chromo domain
IPR001525	C-5 cytosine methyltransferase
IPR018117	DNA methylase, C-5 cytosine-specific, active site
IPR000953	Chromo/chromo shadow domain
IPR016197	Chromo domain-like

Mapman id	Description
12.5.2.3	.Chromatin organisation.DNA methylation.RNA-independent DNA methylation.DNA chromomethylase (CMT)