Dicots PLAZA 4.5 gene overview : Glyma.01G006600

Gene: Glyma.01G006600 (Glycine max)

Overview

Gene Identifier: Glyma.01G006600
Transcript Identifier: Glyma.01G006600.1
Gene Type: Coding gene
Location: Chr01 : 643856-651359 : positive

Family Information

Homologous gene family: HOM04D004588
(78 genes in 55 species)
specific family

Duplication type: Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	Glyma.01G006600.1.Wm82.a2.v1
id	Glyma.01G006600.Wm82.a2.v1
pacid	30544660
pid	Glyma.01G006600.1.p
UniProtKB	I1J4H2
old_id	Glyma01g00990
old_tid	Glyma01g00990.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006468	IBA	UniProt	protein phosphorylation
GO:0006468	IEA	InterPro	protein phosphorylation
GO:0045324	IBA	UniProt	late endosome to vacuole transport
GO:0016236	IBA	UniProt	macroautophagy
GO:0030242	IBA	UniProt	pexophagy
GO:0006623	IBA	UniProt	protein targeting to vacuole
GO:0009846	IEA	PLAZA Integrative Orthology	pollen germination	AT4G29380
GO:0009555	IEA	PLAZA Integrative Orthology	pollen development	AT4G29380

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding
GO:0004672	IEA	InterPro	protein kinase activity
GO:0005524	IEA	UniProt	ATP binding
GO:0005524	IEA	InterPro	ATP binding
GO:0005488	IEA	InterPro	binding
GO:0004674	IBA	UniProt	protein serine/threonine kinase activity

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005770	IBA	UniProt	late endosome
GO:0005643	IBA	UniProt	nuclear pore
GO:0071561	IBA	UniProt	nucleus-vacuole junction
GO:0034271	IBA	UniProt	phosphatidylinositol 3-kinase complex, class III, type I
GO:0034272	IBA	UniProt	phosphatidylinositol 3-kinase complex, class III, type II
GO:0005737	IEA	PLAZA Integrative Orthology	cytoplasm	AT4G29380

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR011989	Armadillo-like helical
IPR015943	WD40/YVTN repeat-like-containing domain
IPR000719	Protein kinase domain
IPR000357	HEAT repeat
IPR001680	WD40 repeat
IPR008271	Serine/threonine-protein kinase, active site
IPR021133	HEAT, type 2
IPR017986	WD40-repeat-containing domain
IPR016024	Armadillo-type fold
IPR011009	Protein kinase-like domain

Mapman id	Description
18.4.20	.Protein modification.phosphorylation.protein kinase (VPS15)
22.5.1.3	.Vesicle trafficking.endomembrane trafficking.PI3-kinase vesicle nucleation complex I/II.regulatory component VPS15