Dicots PLAZA 4.5 gene overview : Glyma.01G004400

Gene: Glyma.01G004400 (Glycine max)

Overview

Gene Identifier: Glyma.01G004400
Transcript Identifier: Glyma.01G004400.1
Gene Type: Coding gene
Location: Chr01 : 431039-432924 : negative

Family Information

Homologous gene family: HOM04D000001
(15702 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D010749
(27 genes in 25 species)
specific family

Duplication type: Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	Glyma.01G004400.1.Wm82.a2.v1
id	Glyma.01G004400.Wm82.a2.v1
pacid	30543875
pid	Glyma.01G004400.1.p
old_id	Glyma01g00750
old_tid	Glyma01g00750.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding
GO:0008270	IEA	InterPro	zinc ion binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR011990	Tetratricopeptide-like helical domain
IPR032867	DYW domain
IPR002885	Pentatricopeptide repeat

Mapman id	Description
35.1	not assigned.annotated