Dicots PLAZA 4.5 gene overview : Glyma.01G004000

Gene: Glyma.01G004000 (Glycine max)

Overview

Gene Identifier: Glyma.01G004000
Transcript Identifier: Glyma.01G004000.1
Gene Type: Coding gene
Location: Chr01 : 415366-417308 : positive

Family Information

Homologous gene family: HOM04D002051
(155 genes in 53 species)
specific family

Duplication type: Tandem duplicate and Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	Glyma.01G004000.1.Wm82.a2.v1
id	Glyma.01G004000.Wm82.a2.v1
pacid	30545018
pid	Glyma.01G004000.1.p
alias	Glyma01g00710
old_tid	Glyma01g00710.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006644	IEA	InterPro	phospholipid metabolic process
GO:0050482	IEA	InterPro	arachidonic acid secretion
GO:0016042	IEA	InterPro	lipid catabolic process
GO:0009733	IEA	PLAZA Integrative Orthology	response to auxin	AT2G19690
GO:0009416	IEA	PLAZA Integrative Orthology	response to light stimulus	AT2G19690
GO:0009846	IEA	PLAZA Integrative Orthology	pollen germination	AT2G19690
GO:0009630	IEA	PLAZA Integrative Orthology	gravitropism	AT2G19690
GO:0009555	IEA	PLAZA Integrative Orthology	pollen development	AT2G19690
GO:0010119	IEA	PLAZA Integrative Orthology	regulation of stomatal movement	AT2G19690
GO:0009860	IEA	PLAZA Integrative Orthology	pollen tube growth	AT2G19690
GO:0030307	IEA	PLAZA Integrative Orthology	positive regulation of cell growth	AT2G19690

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004623	IEA	InterPro	phospholipase A2 activity
GO:0005509	IEA	InterPro	calcium ion binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005794	IEA	PLAZA Integrative Orthology	Golgi apparatus	AT4G29460
GO:0005783	IEA	PLAZA Integrative Orthology	endoplasmic reticulum	AT2G19690

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR016090	Phospholipase A2 domain
IPR001211	Phospholipase A2
IPR033113	Phospholipase A2, histidine active site

Mapman id	Description
5.7.2.2.1	.Lipid metabolism.lipid degradation.phospholipase activities.phospholipase A2 activities.phospholipase A2 (sPLA2)