Dicots PLAZA 4.5 gene overview : Glyma.01G003000

Gene: Glyma.01G003000 (Glycine max)

Overview

Gene Identifier: Glyma.01G003000
Transcript Identifier: Glyma.01G003000.1
Gene Type: Coding gene
Location: Chr01 : 363469-365038 : negative

Family Information

Homologous gene family: HOM04D000098
(1741 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000313
(538 genes in 55 species)
specific family

Duplication type: Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	Glyma.01G003000.1.Wm82.a2.v1
id	Glyma.01G003000.Wm82.a2.v1
pacid	30541645
pid	Glyma.01G003000.1.p
old_id	Glyma01g00600
old_tid	Glyma01g00600.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0008270	IEA	InterPro	zinc ion binding
GO:0003677	IEA	InterPro	DNA binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR001878	Zinc finger, CCHC-type
IPR009057	Homeobox domain-like
IPR006447	Myb domain, plants

Mapman id	Description
15.5.2.2	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB-related)