Dicots PLAZA 4.5 gene overview : FVE25903

Gene: FVE25903 (Fragaria vesca)

Overview

Gene Identifier: FVE25903
Transcript Identifier: FVE25903.1
Gene Type: Coding gene
Location: LG6 : 38399277-38403055 : negative

Family Information

Homologous gene family: HOM04D001240
(238 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D001235
(219 genes in 55 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	mrna25903.1-v1.0-hybrid
tid	mrna25903.1-v1.0-hybrid.v1.1
id	gene25903-v1.0-hybrid.v1.1
pacid	27258025

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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...a custom phylogenetic tree using this gene as seed.

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009116	IEA	InterPro	nucleoside metabolic process
GO:0044206	IEA	InterPro	UMP salvage
GO:0008152	IEA	InterPro	metabolic process
GO:2001006	IEA	PLAZA Integrative Orthology	regulation of cellulose biosynthetic process	AT3G27190
GO:0006207	IEA	PLAZA Integrative Orthology	'de novo' pyrimidine nucleobase biosynthetic process	AT3G27190
GO:1901141	IEA	PLAZA Integrative Orthology	regulation of lignin biosynthetic process	AT3G27190
GO:2000904	IEA	PLAZA Integrative Orthology	regulation of starch metabolic process	AT5G40870

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004849	IEA	InterPro	uridine kinase activity
GO:0005524	IEA	InterPro	ATP binding
GO:0016301	IEA	InterPro	kinase activity
GO:0004845	IEA	PLAZA Integrative Orthology	uracil phosphoribosyltransferase activity	AT5G40870

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT5G40870
GO:0005737	IEA	PLAZA Integrative Orthology	cytoplasm	AT5G40870
GO:0009507	IEA	PLAZA Integrative Orthology	chloroplast	AT5G40870

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR000836	Phosphoribosyltransferase domain
IPR029930	Uridine kinase-like protein, plant
IPR006083	Phosphoribulokinase/uridine kinase
IPR000764	Uridine kinase-like
IPR029057	Phosphoribosyltransferase-like
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
6.2.2.1	.Nucleotide metabolism.pyrimidines.salvage pathway.uridine/cytidine kinase (UCK)