Dicots PLAZA 4.5 gene overview : Cc05_g12020

Gene: Cc05_g12020 (Coffea canephora)

Overview

Gene Identifier: Cc05_g12020
Transcript Identifier: Cc05_g12020.1
Gene Type: Coding gene
Location: chr5 : 25975324-25980732 : negative

Family Information

Homologous gene family: HOM04D000083
(1914 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D003245
(117 genes in 49 species)
specific family

Duplication type: Block duplicate

Descriptions

Description: Protein kinase superfamily protein

Identifiers

Type	Value
tid	GSCOCT00021242001
id	GSCOCG00021242001
pid	GSCOCP00021242001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006468	IEA	InterPro	protein phosphorylation

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004672	IEA	InterPro	protein kinase activity
GO:0005524	IEA	InterPro	ATP binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT1G53050

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR000719	Protein kinase domain
IPR017441	Protein kinase, ATP binding site
IPR008271	Serine/threonine-protein kinase, active site
IPR011009	Protein kinase-like domain

Mapman id	Description
18.4.3.1.8	.Protein modification.phosphorylation.CMGC protein kinase superfamily.CDK protein kinase families.protein kinase (CDK9)