Gene: Cc03_g00790 (Coffea canephora)

Overview top

Gene Identifier
Cc03_g00790
Transcript Identifier
Cc03_g00790.1
Gene Type
Coding gene
Location
chr3 : 583436-587716 : negative

Family Information

Homologous gene family
HOM04D000937
(298 genes in 53 species)
specific family
Orthologous gene family
ORTHO04D001080
(239 genes in 53 species)
specific family

Descriptions

Description
Phytochrome B

Identifiers

Type Value
tidGSCOCT00025673001
idGSCOCG00025673001
pidGSCOCP00025673001

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0007165
IEA
InterProsignal transduction
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0009584
IEA
InterProdetection of visible light
GO:0018298
IEA
InterProprotein-chromophore linkage
GO:0010201
IEA
PLAZA Tree-based Orthologyresponse to continuous far red light stimulus by the high-irradiance response system AT1G09570
GO:0010202
IEA
PLAZA Integrative Orthologyresponse to low fluence red light stimulus AT2G18790
GO:0010244
IEA
PLAZA Integrative Orthologyresponse to low fluence blue light stimulus by blue low-fluence system AT2G18790
GO:2000028
IEA
PLAZA Integrative Orthologyregulation of photoperiodism, flowering AT2G18790
GO:0031347
IEA
PLAZA Integrative Orthologyregulation of defense response AT2G18790
GO:0015979
IEA
PLAZA Integrative Orthologyphotosynthesis AT2G18790
GO:0010029
IEA
PLAZA Integrative Orthologyregulation of seed germination AT2G18790
GO:0010203
IEA
PLAZA Tree-based Orthologyresponse to very low fluence red light stimulus AT1G09570
GO:0017012
IEA
PLAZA Integrative Orthologyprotein-phytochromobilin linkage AT2G18790
GO:0010148
IEA
PLAZA Integrative Orthologytranspiration AT2G18790
GO:0009638
IEA
PLAZA Integrative Orthologyphototropism AT2G18790
GO:0009867
IEA
PLAZA Integrative Orthologyjasmonic acid mediated signaling pathway AT2G18790
GO:0009687
IEA
PLAZA Integrative Orthologyabscisic acid metabolic process AT2G18790
GO:0000724
IEA
PLAZA Tree-based Orthologydouble-strand break repair via homologous recombination LOC_Os03g54084
GO:0009585
IEA
PLAZA Homology (enrichment)red, far-red light phototransduction HOM04D000937
GO:0009266
IEA
PLAZA Integrative Orthologyresponse to temperature stimulus AT2G18790
GO:0009640
IEA
PLAZA Integrative Orthologyphotomorphogenesis AT2G18790
GO:0010374
IEA
PLAZA Integrative Orthologystomatal complex development AT2G18790
GO:0017006
IEA
PLAZA Homology (enrichment)protein-tetrapyrrole linkage HOM04D000937
GO:0017148
IEA
PLAZA Tree-based Orthologynegative regulation of translation AT1G09570
GO:0010617
IEA
PLAZA Integrative Orthologycircadian regulation of calcium ion oscillation AT2G18790
GO:0010017
IEA
PLAZA Integrative Orthologyred or far-red light signaling pathway AT4G16250
GO:0046685
IEA
PLAZA Tree-based Orthologyresponse to arsenic-containing substance AT1G09570
GO:0010218
IEA
PLAZA Integrative Orthologyresponse to far red light AT2G18790
GO:0045892
IEA
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated AT2G18790
GO:0009649
IEA
PLAZA Integrative Orthologyentrainment of circadian clock AT2G18790
GO:0009409
IEA
PLAZA Integrative Orthologyresponse to cold AT2G18790
GO:0006325
IEA
PLAZA Integrative Orthologychromatin organization AT2G18790
GO:0009630
IEA
PLAZA Integrative Orthologygravitropism AT2G18790
GO:0010161
IEA
PLAZA Integrative Orthologyred light signaling pathway AT2G18790
GO:0007131
IEA
PLAZA Tree-based Orthologyreciprocal meiotic recombination LOC_Os03g54084

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0000155
IEA
InterProphosphorelay sensor kinase activity
GO:0004672
IEA
PLAZA Tree-based Orthologyprotein kinase activity AT1G09570
GO:0009883
IEA
PLAZA Integrative Orthologyred or far-red light photoreceptor activity AT4G16250
GO:0009881
IEA
PLAZA Homology (enrichment)photoreceptor activity HOM04D000937
GO:0042803
IEA
PLAZA Integrative Orthologyprotein homodimerization activity AT2G18790
GO:0042802
IEA
PLAZA Integrative Orthologyidentical protein binding AT4G16250
GO:0003729
IEA
PLAZA Tree-based OrthologymRNA binding AT1G09570
GO:1990841
IEA
PLAZA Integrative Orthologypromoter-specific chromatin binding AT2G18790
GO:0031517
IEA
PLAZA Integrative Orthologyred light photoreceptor activity AT2G18790
GO:0031516
IEA
PLAZA Integrative Orthologyfar-red light photoreceptor activity AT2G18790
GO:0043565
IEA
PLAZA Integrative Orthologysequence-specific DNA binding AT2G18790

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
PLAZA Tree-based Orthologycytoplasm AT1G09570
GO:0005634
IEA
PLAZA Integrative Orthologynucleus AT4G16250
GO:0005829
IEA
PLAZA Integrative Orthologycytosol AT2G18790
GO:0016604
IEA
PLAZA Integrative Orthologynuclear body AT2G18790

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000014PAS domain
IPR003594Histidine kinase-like ATPase, C-terminal domain
IPR029016GAF domain-like
IPR003018GAF domain
IPR003661Signal transduction histidine kinase, dimerisation/phosphoacceptor domain
IPR013515Phytochrome, central region
IPR013767PAS fold
IPR001294Phytochrome
IPR013516Phytochrome chromophore binding site
IPR016132Phytochrome chromophore attachment domain
IPR005467Histidine kinase domain

Mapman id Description
26.1.1.1.External stimuli response.light.red/far red light.phytochrome photoreceptor (PHY)
26.4.1.2.External stimuli response.temperature.sensing and signalling.temperature sensor protein (PHY-B)