Dicots PLAZA 4.5 gene overview : Cc01_te000172

Gene: Cc01_te000172 (Coffea canephora)

Overview

Gene Identifier: Cc01_te000172
Transcript Identifier: Cc01_te000172.1
Gene Type: Transposon
Location: chr1 : 14016-14111 : negative

Family Information

No gene family defined for this gene.

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	mp172-1_chr1_RLX-incomp_COFCA-L-B4399-Map1
id	ms172_chr1_RLX-incomp_COFCA-L-B4399-Map1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

No GO associations found for this gene.

No InterPro domains detected for this gene.

No MapMan annotations defined for this gene.