Dicots PLAZA 4.5 gene overview : Cc01_g01400

Gene: Cc01_g01400 (Coffea canephora)

Overview

Gene Identifier: Cc01_g01400
Transcript Identifier: Cc01_g01400.1
Gene Type: Coding gene
Location: chr1 : 2174778-2176506 : positive

Family Information

Homologous gene family: HOM04D000088
(1847 genes in 45 species)
specific family

Duplication type: Tandem duplicate

Descriptions

Description: Putative F-box/LRR-repeat protein At3g59190

Identifiers

Type	Value
tid	GSCOCT00037912001
id	GSCOCG00037912001
pid	GSCOCP00037912001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR032675	Leucine-rich repeat domain, L domain-like
IPR001810	F-box domain
IPR006566	FBD domain

Mapman id	Description
35.1	not assigned.annotated