Dicots PLAZA 4.5 gene overview : Cc01_g01350

Gene: Cc01_g01350 (Coffea canephora)

Overview

Gene Identifier: Cc01_g01350
Transcript Identifier: Cc01_g01350.1
Gene Type: Coding gene
Location: chr1 : 2095254-2096784 : positive

Family Information

Homologous gene family: HOM04D000088
(1847 genes in 45 species)
specific family

Duplication type: Tandem duplicate

Descriptions

Description: Putative uncharacterized protein

Identifiers

Type	Value
tid	GSCOCT00037924001
id	GSCOCG00037924001
pid	GSCOCP00037924001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	PLAZA Homology (enrichment)	protein binding	HOM04D000088

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR032675	Leucine-rich repeat domain, L domain-like
IPR006566	FBD domain
IPR013101	Leucine-rich repeat 2

Mapman id	Description
35.1	not assigned.annotated