Dicots PLAZA 4.5 gene overview : Cc01_g01340

Gene: Cc01_g01340 (Coffea canephora)

Overview

Gene Identifier: Cc01_g01340
Transcript Identifier: Cc01_g01340.1
Gene Type: Coding gene
Location: chr1 : 2093514-2093855 : negative

Family Information

Homologous gene family: HOM04D000014
(4449 genes in 47 species)
specific family
Orthologous gene family: ORTHO04D013236
(10 genes in 6 species)
specific family

Duplication type: Tandem duplicate

Descriptions

Description: Hypothetical protein

Identifiers

Type	Value
tid	GSCOCT00037925001
id	GSCOCG00037925001
pid	GSCOCP00037925001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0043531	IEA	InterPro	ADP binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR002182	NB-ARC
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
35.2	not assigned.not annotated