Dicots PLAZA 4.5 gene overview : Cc01_g01260

Gene: Cc01_g01260 (Coffea canephora)

Overview

Gene Identifier: Cc01_g01260
Transcript Identifier: Cc01_g01260.1
Gene Type: Coding gene
Location: chr1 : 2005275-2005760 : positive

Family Information

Homologous gene family: HOM04D000133
(1389 genes in 52 species)
specific family
Orthologous gene family: ORTHO04D000113
(921 genes in 52 species)
specific family

Duplication type: Tandem duplicate

Descriptions

Description: Protein of Unknown Function (DUF239)

Identifiers

Type	Value
tid	GSCOCT00037944001
id	GSCOCG00037944001
pid	GSCOCP00037944001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

No GO associations found for this gene.

InterPro	Description
IPR025521	Neprosin activation peptide

Mapman id	Description
35.2	not assigned.not annotated