Dicots PLAZA 4.5 gene overview : Cc01_g01210

Gene: Cc01_g01210 (Coffea canephora)

Overview

Gene Identifier: Cc01_g01210
Transcript Identifier: Cc01_g01210.1
Gene Type: Coding gene
Location: chr1 : 1822194-1822649 : negative

Family Information

Homologous gene family: HOM04D000183
(1080 genes in 53 species)
specific family

Duplication type: Tandem duplicate

Descriptions

Description: Putative Disease resistance response protein 206

Identifiers

Type	Value
tid	GSCOCT00037967001
id	GSCOCG00037967001
pid	GSCOCP00037967001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016853	IEA	InterPro	isomerase activity

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR034871	Allene oxide cyclase/dirigent protein
IPR004265	Dirigent protein

Mapman id	Description
35.1	not assigned.annotated