Dicots PLAZA 4.5 gene overview : Cc01_g01000

Gene: Cc01_g01000 (Coffea canephora)

Overview

Gene Identifier: Cc01_g01000
Transcript Identifier: Cc01_g01000.1
Gene Type: Coding gene
Location: chr1 : 1587369-1589177 : negative

Family Information

Homologous gene family: HOM04D000001
(15702 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000001
(8914 genes in 52 species)
specific family

Duplication type: Tandem duplicate

Descriptions

Description: Pentatricopeptide repeat-containing protein At2g21090

Identifiers

Type	Value
tid	GSCOCT00038000001
id	GSCOCG00038000001
pid	GSCOCP00038000001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR011990	Tetratricopeptide-like helical domain
IPR002885	Pentatricopeptide repeat

Mapman id	Description
35.1	not assigned.annotated