Dicots PLAZA 4.5 gene overview : Cc01_g00980

Gene: Cc01_g00980 (Coffea canephora)

Overview

Gene Identifier: Cc01_g00980
Transcript Identifier: Cc01_g00980.1
Gene Type: Coding gene
Location: chr1 : 1565334-1570417 : positive

Family Information

Homologous gene family: HOM04D000814
(340 genes in 55 species)
specific family

Descriptions

Description: Metal tolerance protein 4

Identifiers

Type	Value
tid	GSCOCT00038003001
id	GSCOCG00038003001
pid	GSCOCP00038003001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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...a custom phylogenetic tree using this gene as seed.

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006812	IEA	InterPro	cation transport
GO:0055085	IEA	InterPro	transmembrane transport
GO:0071421	IEA	PLAZA Integrative Orthology	manganese ion transmembrane transport	AT3G58060

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008324	IEA	InterPro	cation transmembrane transporter activity
GO:0005384	IEA	PLAZA Integrative Orthology	manganese ion transmembrane transporter activity	AT3G58060

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016021	IEA	InterPro	integral component of membrane
GO:0009705	IEA	PLAZA Integrative Orthology	plant-type vacuole membrane	AT3G58060
GO:0035618	IEA	PLAZA Integrative Orthology	root hair	AT3G58060

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR027470	Cation efflux protein, cytoplasmic domain
IPR002524	Cation efflux protein

Mapman id	Description
24.2.9.2.2	.Solute transport.carrier-mediated transport.CDF superfamily.CDF family.manganese cation transporter (Mn-CDF)