Dicots PLAZA 4.5 gene overview : Cc01_g00920

Gene: Cc01_g00920 (Coffea canephora)

Overview

Gene Identifier: Cc01_g00920
Transcript Identifier: Cc01_g00920.1
Gene Type: Coding gene
Location: chr1 : 1499270-1500079 : negative

Family Information

Homologous gene family: HOM04D000010
(5389 genes in 51 species)
specific family
Orthologous gene family: ORTHO04D000230
(643 genes in 27 species)
specific family

Duplication type: Tandem duplicate

Descriptions

Description: Putative disease resistance protein (TIR-NBS-LRR class)

Identifiers

Type	Value
tid	GSCOCT00038010001
id	GSCOCG00038010001
pid	GSCOCP00038010001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0043531	IEA	PLAZA Homology (enrichment)	ADP binding	HOM04D000010

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR032675	Leucine-rich repeat domain, L domain-like

Mapman id	Description
35.2	not assigned.not annotated