Dicots PLAZA 4.5 gene overview : Cc01_g00860

Gene: Cc01_g00860 (Coffea canephora)

Overview

Gene Identifier: Cc01_g00860
Transcript Identifier: Cc01_g00860.1
Gene Type: Coding gene
Location: chr1 : 1330701-1334049 : negative

Family Information

Homologous gene family: HOM04D000159
(1260 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000462
(425 genes in 55 species)
specific family

Descriptions

Description: Tubulin alpha-3 chain

Identifiers

Type	Value
tid	GSCOCT00011081001
id	GSCOCG00011081001
pid	GSCOCP00011081001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0007017	IEA	InterPro	microtubule-based process
GO:0046686	IEA	PLAZA Integrative Orthology	response to cadmium ion	AT5G19780
GO:0071258	IEA	PLAZA Integrative Orthology	cellular response to gravity	AT5G19770

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003924	IEA	InterPro	GTPase activity
GO:0005200	IEA	InterPro	structural constituent of cytoskeleton
GO:0005525	IEA	InterPro	GTP binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005874	IEA	InterPro	microtubule
GO:0009506	IEA	PLAZA Integrative Orthology	plasmodesma	AT5G19780
GO:0005618	IEA	PLAZA Integrative Orthology	cell wall	AT5G19780
GO:0016020	IEA	PLAZA Integrative Orthology	membrane	AT5G19780
GO:0048046	IEA	PLAZA Integrative Orthology	apoplast	AT5G19770
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT5G19780
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT5G19770

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR018316	Tubulin/FtsZ, 2-layer sandwich domain
IPR003008	Tubulin/FtsZ, GTPase domain
IPR000217	Tubulin
IPR002452	Alpha tubulin
IPR013838	Beta tubulin, autoregulation binding site
IPR017975	Tubulin, conserved site
IPR008280	Tubulin/FtsZ, C-terminal

Mapman id	Description
20.1.1.1	.Cytoskeleton organisation.microtubular network.alpha-beta-Tubulin heterodimer.component alpha-Tubulin