Dicots PLAZA 4.5 gene overview : Cc01_g00580

Gene: Cc01_g00580 (Coffea canephora)

Overview

Gene Identifier: Cc01_g00580
Transcript Identifier: Cc01_g00580.1
Gene Type: Coding gene
Location: chr1 : 928708-928950 : positive

Family Information

Homologous gene family: HOM04D205084
(orphan gene)
specific family

Descriptions

Description: Hypothetical protein

Identifiers

Type	Value
tid	GSCOCT00011039001
id	GSCOCG00011039001
pid	GSCOCP00011039001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

No GO associations found for this gene.

No InterPro domains detected for this gene.

Mapman id	Description
35.2	not assigned.not annotated